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metricminer - Mine Metrics from Common Places on the Web

Mine metrics on common places on the web through the power of their APIs (application programming interfaces). It also helps make the data in a format that is easily used for a dashboard or other purposes. There is an associated dashboard template and tutorials that are underdevelopment that help you fully utilize 'metricminer'.

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6.25 score 59 scripts 402 downloads

gimap - Calculate Genetic Interactions for Paired CRISPR Targets

Helps find meaningful patterns in complex genetic experiments. First gimap takes data from paired CRISPR (Clustered regularly interspaced short palindromic repeats) screens that has been pre-processed to counts table of paired gRNA (guide Ribonucleic Acid) reads. The input data will have cell counts for how well cells grow (or don't grow) when different genes or pairs of genes are disabled. The output of the 'gimap' package is genetic interaction scores which are the distance between the observed CRISPR score and the expected CRISPR score. The expected CRISPR scores are what we expect for the CRISPR values to be for two unrelated genes. The further away an observed CRISPR score is from its expected score the more we suspect genetic interaction. The work in this package is based off of original research from the Alice Berger lab at Fred Hutchinson Cancer Center (2021) <doi:10.1016/j.celrep.2021.109597>.

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5.98 score 1 stars 9 scripts 489 downloads

ottrpal - Companion Tools for Open-Source Tools for Training Resources (OTTR)

Tools for converting Open-Source Tools for Training Resources (OTTR) courses into Leanpub or Coursera courses. 'ottrpal' is for use with the OTTR Template repository to create courses.

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edtech-software

5.43 score 3 stars 1 dependents 12 scripts 458 downloads